Publications

 

 

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Citation indices (Google Scholar):

Citations: 137.

h-index: 7.

i10-index: 7.

RG Score (Research Gate): 19.31

Journals:

1.   Pau Pascual-Garcia, Brian Debo, Jennifer Aleman, Jessica A. Talamas, Yemin Lan, Nha H. Nguyen, Kyoung J. Won, Maya Capelson, Metazoan nuclear pores provide a scaffold for poised genes and mediate induced enhancer-promoter contacts, Molecular Cell, in press, 2017.

2.   Nha Nguyen, An Vo, and Heng Huang. Heavy-Tailed Noise Suppression and Derivative Wavelet Scalogram for Detecting DNA Copy Number Aberrations. IEEE/ACM Transactions on Computational Biology and Bioinformatics (TCBB), in press, 2016.

3.   DM Cohen, KJ Won, N Nguyen, MA Lazar, CS Chen, DJ Steger. ATF4 licenses C/EBPβ activity in human mesenchymal stem cells primed for adipogenesis, eLife 4, e06821, 2015.

4.   Nha Nguyen, An Vo and Kyoung-Jae Won. A stationary wavelet entropy based clustering approach accurately predicts gene expression, Journal of Computational Biology, 22 (3), 236-249, 2015.

5.   Nha Nguyen, An Vo and Kyoung-Jae Won. A wavelet approach to detect enriched regions and explore epigenomic landscapes, Journal of Computational Biology, 21 (11), 846-854, 2014.

6.   Nha Nguyen, An Vo and Kyoung-Jae Won. A wavelet-based method to exploit epigenomic language in the regulatory region, Bioinformatics , 30 (7): 908-914, 2014.

7. Nha Nguyen, Heng Huang, Soontorn Oraintara, An Vo. Mass Spectrometry Data Processing Using Zero-Crossing Lines in Multi-Scale of Gaussian Derivative Wavelet (Modified Version), Bioinformatics, 26 (18): i659-i665, 2010.

8. Nha Nguyen,  An Vo, Heng Huang (Nha Nguyen and An Vo are joint first authors ). Solenoid and Non-solenoid Protein Recognition, Bioinformatics, 26 (18): i467-i473, 2010.

9. An Vo, Soontorn Oraintara, Nha Nguyen. Vonn distribution of relative phase for statistical image modeling in complex wavelet domain, Signal Processing (Elsevier), 2010.

10.          Nha Nguyen, Heng Huang, Soontorn Oraintara, An Vo. Stationary Wavelet Packet Transform and Dependent Laplacian Bivariate Shrinkage Estimator for Array-CGH Data Smoothing, Journal of Computational Biology, 17(2): 139-152, February, 2010.

11.          Nha Nguyen, Heng Huang, Soontorn Oraintara, An Vo. Peak Detection in Mass Spectrometry by Gabor Filters and Envelope Analysis, Journal of Bioinformatics and Computational Biology, Vol. 7, No. 3, pp. 547-569, 2009.

12.          Heng Huang, Nha Nguyen, Soontorn Oraintara, An Vo. Array CGH Data Modeling and Smoothing in Stationary Wavelet Packet Transform Domain, BMC Genomics, Vol. 9 (S2:S17), 2008.

13.          Heng Huang, Li Shen, Nha Nguyen. Three Dimensional Models for Cardiac Bioelectricity Simulation: Cell to Organ, Simulation: Transactions of The Society for Modeling and Simulation International, Vol. 83, No. 4, pp. 321-327, 2007.

Conferences:

1.    Nha Nguyen and Kyoung-Jae Won. Gaussian derivative wavelets identify dynamic changes in histone modification, IEEE CIBCB 2014.

2.    Nha Nguyen, Heng Huang, Soontorn Oraintara, An Vo. GABORLOCAL: Peak Detection In Mass Spectrum By Gabor Filters And Gaussian Local Maxima. Computational Systems Bioinformatics Conference (CSB 2008), pp. 85-96. 

3.    Nha Nguyen, Heng Huang, Soontorn Oraintara, An Vo. Dependent Laplacian Bivariate Shrinkage Estimator For SWPT Based Array-CGH Data Smoothing. Computational Systems Bioinformatics Conference (CSB 2008), poster. 

4.    Nha Nguyen, Heng Huang, Soontorn Oraintara, Yuhang Wang. Denoising of Array-Based DNA Copy Number Data Using The Dual-tree Complex Wavelet Transform. IEEE 7th International Symposium on Bioinformatics & Bioengineering (BIBE 2007), pp. 137-144.

  1. Nha Nguyen, Heng Huang, Soontorn Oraintara, An Vo. A New Smoothing Model for Analyzing Array CGH Data. IEEE 7th International Symposium on Bioinformatics & Bioengineering (BIBE 2007), pp. 1027-1034.
     

Papers in preparation:

1.     Using directional filter banks to study epigenomic landscapes.

2.     Enhancer and promoter interaction in Adipose cell.

3.     mRNA degradation in Adipose cell.

4.     Wavelet and Graph theory in studying Dystonia

5.     Wavelet and Graph theory in studying Parkinson

Updated Jan 2018